CONNECTING YOUR BIOINFORMATICS APPS TO THE CLOUD


  • Accelerate your bioinformatics computations by plugging Amazon Web Services (AWS) into Geneious Prime

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  • Save time with bioinformatics tasks

  • Free up Geneious Prime locally

  • Access new algorithms through ConnextBio Plugin

  • Sequence data never viewed without explicit permission

ALGORITHMS


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SPAdes

De Novo Assembler - small genomes

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MAFFT

Multiple Sequence Aligner

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ABySS

De Novo Assembler - large genomes

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TopHat

RNA-Seq splice junction mapper

ABOUT


ConnextBio is a global, virtual team of scientists and engineers with deep roots in data integration and the Geneious user community. Our geographic footprint includes California, Utah, Ohio, India, Switzerland, and the Netherlands. We believe better connected scientific tools have the potential to accelerate discovery in the life sciences.

We develop data middleware solutions focused on the bioinfomatics space. Our first service offering leverages a data middleware solution that integrates the world`s best desktop-based sequence analysis software package (geneious.com) with the power of cloud computing. You can offload the compute intensive bioinfomatics processes from your desktop and run them in the cloud (AWS, Microsoft Azure, etc.) or other computer servers.

CASE STUDY


Below you will find a comparison between assembling demo data with SPAdes on an average laptop computer and the ConnextBio plugin for Geneious Prime.

Data: MDA single-cell S. aureus; 14.6Gb, 33M reads, 2x100bp, insert size ~ 214bp (Illumina Genome Analyzer IIx) [Raw Data]

Desktop/Laptop Computer
    • 10 GB RAM
    • Intel i7-7500U CPU @2.70GHz

Total Assembly Duration: 9 hours 17 minutes

ConnextBio

    • Upload Time: ~35 minutes (assumes an internet speed of 50 Mbps)
    • Process Time: 48 minutes
    • Download Time: ~35 minutes (depending on internet speed)

Total: ~2 hrs

Time Savings: 7+ hours

ConnextBio processing details

  • Bioinformatics jobs are off loaded to the cloud for processing.
  • Your data is uploaded and processed securely.
  • The results are downloaded to your computer and deleted from our system.
  • ConnextBio never views your sequence data without explicit permission. Privacy Notice
  • Multiple configuration options are available.

PRICING


  • System configured based on your requirements.
  • Plugin can be downloaded.
  • Cost for each job is based on the complexity of the process.
  • Estimates for cost and processing time provided.
  • Final costs provided at the end of the run.

Sign up for Demo Access


If you are interested in receiving demo access to the ConnextBio plugin for Geneious, click on join

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THANK YOU!

Thanks for requesting access to our demo plugin! We have sent you an email confirming that you are on the list and will let you know once the demo is released.